BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB003A06LP1|AL425056
(813 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig552 843 0.0
3x_Contig1290 333 3e-91
>3x_Contig552
Length = 1588
Score = 843 bits (415), Expect = 0.0
Identities = 504/541 (93%), Gaps = 6/541 (1%)
Strand = Plus / Minus
Query: 1 gatccatactcaatcagtttctctcgccttttatcaagcgatattttcaatttagacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gatccatactcaatcagtttctctcgccttttatcaagcgatattttcaatttagacgca 478
Query: 61 gtgactcagtatgackattttgtaaaatyagaacccggcactgtgttcgatggtgatgtg 120
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 477 gtgactcagtatgactattttgtaaaattagaacccggcactgtgttcgatggtgatgtg 418
Query: 121 agggacgatatckttgaaaggtttacragtgattcgmatactaacgttggtattgtcttc 180
||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 417 aggtacgatatctttgaaaggtttacaagtgattcgaatactaacgttggtattgtcttc 358
Query: 181 mtggataaaaatcttgactcagaagatatcccaatctttcaatga-aacactgcgtgctt 239
|||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |||
Sbjct: 357 atggataaaaatcttgactca-aagatatcccaatctttcaatgagagcactgcgttctt 299
Query: 240 tgcmagaaaagaaaaacatcaaactatcagcattatctcaktgatgrttrcaacaattat 299
||| |||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct: 298 tgcaagaaaagaaaaacatcaaactatc-gcattatctcattgatgattacaacaattat 240
Query: 300 aacggagtacattattggtacggraacgtttctcgttggtaaaactgcrkttttcaatac 359
||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 239 aacggagta-attattgatacggaaacgtttctcgttggtaaaactgcatttttcaatac 181
Query: 360 aaaacmgkatctttctttcgttcgcyttatgggtgaaatgaggttgaaatttaatgracc 419
||||| | |||| |||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct: 180 aaaacagtatctctctttcgttcgctttatggatgaaatgaggttgaaatttaatgaacc 121
Query: 420 ttggtgctgcaagtgraataakgacagsatatttcgcyatagtgtatagtgaagccactt 479
||||| ||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct: 120 ttggt-ctgcaagtgaaataatgacagcatatttcgctatagtgtatagtgaagccactt 62
Query: 480 tcaaatcagcttggggttctgnaaaggngctgacagttcgcaaagvtct-catggtgttc 538
||||||||||||||| ||||| ||||| ||||||||||||||||| ||| ||||||||||
Sbjct: 61 tcaaatcagcttgggattctgaaaaggagctgacagttcgcaaagatctacatggtgttc 2
Query: 539 g 539
|
Sbjct: 1 g 1
>3x_Contig1290
Length = 6501
Score = 333 bits (164), Expect = 3e-91
Identities = 182/188 (96%), Gaps = 2/188 (1%)
Strand = Plus / Minus
Query: 626 aaaagtatctatcaaactaagcaaagtttgtscaatttctacatctgatatcaatgaact 685
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 6411 aaaagtatctatcaa-ctaagcaaagtt-gtccaatttctacatctgatatcaatgaact 6354
Query: 686 gttactacgcaatgtcttaaatwgtaactgtgatatagataacaggktcttccatagtga 745
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 6353 gttactacgcaatgtcttaaattgtaactgtgatatagataacaggttcttccatagtga 6294
Query: 746 tgttgactcatttacgttattaagcaatatgactcmggaatctgaatcatcaagagtaat 805
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6293 tgttgactcatttacgttattaagcaatatgactccggaatctgaatcatcaagagtaat 6234
Query: 806 cgtcaatg 813
||||||||
Sbjct: 6233 cgtcaatg 6226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.33
Gapped
Lambda K H
1.41 0.716 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4118
Number of Sequences: 1807
Number of extensions: 4118
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 2
length of query: 813
length of database: 10,358,551
effective HSP length: 16
effective length of query: 797
effective length of database: 10,329,639
effective search space: 8232722283
effective search space used: 8232722283
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.4 bits)
S1: 12 (24.9 bits)
S2: 49 (100.1 bits)